Skip to content
TASSEL 5
Homozygous Genotype
Initializing search
tassel
Home
Download
Getting Started
Community
Version History
TASSEL 5
tassel
Home
Home
Download
Download
Nightly Builds
Getting Started
Getting Started
Installation
Installation
Desktop Application
Standalone
JVM Library
R Package (rTASSEL)
User Manual
User Manual
Introduction
File Menu
File Menu
Open / Open As
Data FAQ
Save As / Export
Data Menu
Data Menu
Synonymizer
Joins
Merge Genotype Tables
Separate
Homozygous Genotype
Set Low Depth Genos To Missing
Transform Phenotype
Numerical Genotype
ABH Genotype
Thin Sites By Position
Create Hybrid Genotypes
Geno Summary
Impute Menu
Impute Menu
FSFHap Imputation
Numerical Impute
Missing Phenotype Imputation
Filter Menu
Filter Menu
Filter Genotype Table Sites
Filter Genotype Table Taxa
Filter Traits
Analysis Menu
Analysis Menu
Linkage Disequilibrium
Distance Matrix
Kinship
Cladogram
Pedigree Relationship Matrix (A)
Combined A and G Matrix (H)
MDS
PCA
Remove NaN from Distance Matrix
GLM
MLM
Weighted MLM
Genomic Selection
Stepwise
Fast Association
VCAP Scan
Association Analysis using GLM
Association Analysis using MLM
Estimation of Kinship using Genetic Markers
Principal Component Analysis
Results Menu
Results Menu
Archaeopteryx Tree
LD Plot
Chart
QQ Plot
Manhattan Plot
GBS Menu
Help Menu
Frequently Asked Questions
Executing TASSEL
User Guide (PDF)
Appendix
Appendix
Nucleotide Codes
Depth Encodings
Tutorial Datasets
References
Pipelines
Pipelines
Pipeline Tutorial
Pipeline Reference
GBSv2 Pipeline
Archived
Archived
UNEAK Pipeline
Pan-genome Atlas (PanA)
Cassava Production Pipeline
Pipeline CLI (v3 / v4)
Community
Community
Get Involved
Get Involved
Contributing
Code of Conduct
Developer
Developer
Building from Source
Project Architecture
Developing Plugins
Testing
Releasing
Version History
Homozygous Genotype
¶
This changes all heterozygous values to unknown (N).
Back to top