Pipelines¶
TASSEL supports several command-line pipelines for genotyping, association analysis, and data processing. Use the links below to browse pipeline documentation.
General¶
- Pipeline Tutorial - step-by-step pipeline walkthrough
- Pipeline Reference - command-line interface reference
Genotyping Pipelines¶
- GBSv2 Pipeline - GBS discovery and production pipeline (recommended)
Archived¶
- UNEAK Pipeline - UNEAK genotyping pipeline
- Pan-genome Atlas (PanA) - pan-genome atlas pipeline
- Cassava Production Pipeline - Cassava production pipeline
- Pipeline CLI (v3 / v4) - TASSEL v3/v4 pipeline overview