getSumExpFromGenotypeTable.Rd
This function will generate an object of
SummarizedExperiment
class for marker data derived from a
TasselGenotypePhenotype
class object.
getSumExpFromGenotypeTable(
tasObj,
useRef = FALSE,
coerceDosageToInt = TRUE,
verbose = FALSE
)
An object of class TasselGenotypePenotype
.
Use reference alleles or major alleles at sites. If
FALSE
, major alleles will be used. Defaults to FALSE
.
Should dosage array be returned as integer
values? If FALSE
, dosage array will be returned as type
raw
byte values. Returning raw
byte values. Will greatly
save on memory. Defaults to TRUE
.
Should messages be displayed to console? Defaults to
FALSE
.
Returns a SummarizedExperiment
of TASSEL genotype data.