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R interface for TASSEL's tree creation methods

Source: R/analysis_phylogeny_functions.R
createTree.Rd

This function acts as a wrapper for TASSEL's CreateTreePlugin.

Usage

createTree(tasObj, clustMethod = c("Neighbor_Joining", "UPGMA"))

Arguments

tasObj

An object of class TasselGenotypePenotype.

clustMethod

What clustering method should be used? Current options are UGMA and Neighbor_Joining. Defaults to Neighbor_Joining.

Value

Returns a phylo tree object. See the [ape]https://cran.r-project.org/web/packages/ape/ape.pdf package for further details.